Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNHDLESIKQAALIEYEVREQGSSDVLDSNISKEPLEFIIGANQIIVGLEKAVLKAQIGEWEEIVIAPEEAYGVYESGYLQEVPRDQF-EGIELEKGMSVFGQTEDNQTIQATIKDFSNTHVMVDYNHPLAGKTLAFRFKVLGFREVSEEEILASHHDSGTGCCGGHGGHGGKKGGGCGCSCSHG
4ODM Chain:A ((10-147))
-------TIRYTLQVEGEVLDQGE------------LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVREATPEELLHGHAHL--------------------------
General information:
TITO was launched using:
RESULT:
Template:
4ODM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59268 for 854 contacts (-69.4/contact) +
2D Compatibility (PS) -14526 + (NN) 505 + (LL) -824
1D Compatibility (HY) -6800 + (ID) 2350
Total energy: -83263.0 ( -97.50 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_4ODM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ODM-query.scw
PDB file :
Tito_Scwrl_4ODM.pdb
: