Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRTELKEAIVSENQKASASVDESLLENIKKVIKP
1VPZ Chain:A ((2-54))
-LILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEK---------------------
General information:
TITO was launched using:
RESULT:
Template:
1VPZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3532 for 232 contacts (-15.2/contact) +
2D Compatibility (PS) -5406 + (NN) 693 + (LL) 1944
1D Compatibility (HY) 1200 + (ID) 500
Total energy: -5601.0 ( -24.14 by residue)
QMean score : 0.235
(partial model without unconserved sides chains):
PDB file :
Tito_1VPZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VPZ-query.scw
PDB file :
Tito_Scwrl_1VPZ.pdb
: