Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLGISGASGIPLALRFLEKL-PKEIEIFVVASKNAHVVALEESNINLKNAMKDLRPSAT-----------FFNEQDIHASIASGSYGIHKMAIIPASMDMVAKIAHGFGGDLISRSASVMLKEKRPLLIAPREMPLSAIMLENLLKLAHSNAIIAPPMMTYYTQSKTLEAMQDFLVGKWFDSLGIENDLYPRWGMN
4ZAX Chain:A ((6-201))
-RITLAMTGASGAQYGLRLLDCLVQEEREVHFLISKAAQLVMATETDVALPAKPQAMQAFLTEYCGAAAGQIRVFGQNDWMAPPASGSSAPNAMVICPCSTGTLSAVATGACNNLIERAADVALKERRPLVLVPREAPFSSIHLENMLKLSNLGAVILPAAPGFYHQPQSVEDLVDFVVARILNTLGIPQDMLPRWGEQ
General information:
TITO was launched using:
RESULT:
Template:
4ZAX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151638 for 1490 contacts (-101.8/contact) +
2D Compatibility (PS) -20018 + (NN) -9750 + (LL) 208
1D Compatibility (HY) -14400 + (ID) 3550
Total energy: -199148.0 ( -133.66 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_4ZAX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZAX-query.scw
PDB file :
Tito_Scwrl_4ZAX.pdb
: