Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDYKRFKGKHANIVIEIISLLEKGVKKAQEILEKPDAGSYTQLENSSGDTPIKADLALDKFLEETFLSLENVKSVFSEEKETPVTKE---NGSYLIAYDPLDGSSVMEANFLVGTIIGVYEKD-----------YKAQNLVASLYVVFGHKIELVVAL-EEVYRYAFYQNKFHFI---ETIVLENKGKIIA-SGGNQKDFSLGLKKALE--GFFAEN---YRLRYSGSMVADVHHVLVKKGGMFSY------PQKKLRKLFEVFPLALMVEKAKGEAFYFDKGVKKRLLDQSVESYHEKSECYLASPHEA----QILEKHLKGE |
| 2F3D Chain:A ((65-335)) | --------------------------------------------NVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLV-YGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTG----KEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHAAK- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2F3D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -126718 for 1946 contacts (-65.1/contact) +
2D Compatibility (PS) -25916 + (NN) -9534 + (LL) 3772
1D Compatibility (HY) -17200 + (ID) 4250
Total energy: -179846.0 ( -92.42 by residue)
QMean score : 0.346
|
|
|