Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLTLKGKYNEAKVFTDNVDDNTIGQIITLCNQPFAKDSKIRIMPDTHGGKGCVIGTTMTIQDKIVPNLVGVDIGCGLYVVKLKPGKLKMDFDKLDKVIRERVPSGSKTHDKPVDEFDLEGIVAPIHHGWVARSIGTLGGGNHFIEVNQGSDGIYLVIHSGSRVLGKEIAEYHQEVAYKRLDILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYDLSYVTGVDLKNYLNDMEIAQKFAARNRYVMAQIILKAMKWDKAVVSAFDCVHNYIDIEHNMLRKGATSAQLGEQIIVPLNMREGSILATGKGNADWNYSAPHGAGRMLSRSKAKAQISLESYQAA-MKDVWTTSVSKKTIDEAPKAYKSAKQLLADVEDTMEIQEIIKPLYNFKA |
5AMR Chain:A ((768-904)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKTILEIECEQRENIKEIWSTNCTKQTVNLKILIHSLCKNLLADTSRHNHLRNRIENRNNFR- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 5AMR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 5473 for 263 contacts (20.8/contact) +
2D Compatibility (PS) -6513 + (NN) -1204 + (LL) 20528
1D Compatibility (HY) -2000 + (ID) 850
Total energy: 15434.0 ( 58.68 by residue)
QMean score : 0.160
|
|
|