Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDQQKKIQILKDLVNIDSTNGHEEQVANYLQKLLAEHGIESEKVQYDLDRASLVSEIGSSNEKVLAFSGHMDVVDAGDVSKWKFPPFEATEHEGKLYGRGATDMKSGLAAMVIAMIELHEEKQKLNGKIRLLATVGEE-IGELGAEQLTQKGYADD--LDGLIIGEPS-----GHRIVYAHKGSINYTVKSTGKNAHSSMPEFGVNAIDNLLLFYNEVEKFVKSIDATNEILGDFIHNVTVIDGGNQVNS-IPEKAQLQGNIRSIPEMDNETVKQVLVKIINKLNKQENVNLELIFDYDKQPVFSDKNSDLVHIAKSVASDIVKEEIPLLGISGTTDAAEFTKAKKEFPVIIFGPGNETPHQVNENVSIGNYLEMVDVYKRIATEFLS |
| 3IC1 Chain:A ((2-375)) | --KEKVVSLAQDLIRRPSISPNDEGCQQIIAERLEKLGFQIEWMPFN-DTLNLWAKHGTS-EPVIAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIHVVETLMARDEKITYCMVGEPSSAKNLGDVVKNGRRGSITGNLYIQGIQ----YPHLAENPIHKAALFLQELTTY--QWDKGNEFFPPTSLQIANIHAGTGS--VIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEK----HNLKYRIEWNLSGKPFLTKPGKLLDSITSAIEETIGITPKAETG-GGTSDGRFIALMGAE--VVEFGPLNSTIHKVNECVSVEDLGKCGEIYHKMLVNLL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IC1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -81027 for 3061 contacts (-26.5/contact) +
2D Compatibility (PS) -38139 + (NN) -17078 + (LL) 956
1D Compatibility (HY) -21200 + (ID) 5400
Total energy: -161888.0 ( -52.89 by residue)
QMean score : 0.462
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