Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDFMTLEKVREKGPLVHNITNIVVANDSANGLLAIGASPIMASAKEEMDELAKMADVLVINIGTLDGELVTAMKIAGRAANVAGTPVVLDPVGVGATSYRRKVVQELLAEIQFAAIRGNAGELAAIAGEAWEAKGVDAGVGSADVLSIAGKVANEWSTVVIISGEVDVISDGTRFAKVANGSALLPRITGSGCLLSAVCGSFIAVQDDAFRASVEACASYAVASEYAEMELERKLPGSFRPLFLDALASWSVEKTRAKAKIQESGEHK
3HPD Chain:A ((3-262))
-FIIEALKRVRERRPLVHNITNFVVMNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEILSR-GVDVLKGNFGEISALLGEEG---------GEEEAKKLTMNAAREFNTTVAVTGAVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVT-EPLKATTSALVTFGIAAEKAYEEA--KYPGSFHVKLYDWLYRINENVIRTYAKVRE-----
General information:
TITO was launched using:
RESULT:
Template:
3HPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -177171 for 2342 contacts (-75.6/contact) +
2D Compatibility (PS) -27075 + (NN) -10017 + (LL) 972
1D Compatibility (HY) -18000 + (ID) 5550
Total energy: -236841.0 ( -101.13 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3HPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HPD-query.scw
PDB file :
Tito_Scwrl_3HPD.pdb
: