Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHSNQKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRYEGFGPNGSMIIVDALTNNVNRTASDVRAAYSKNGGNMGV------SGSVAYMFDNTAIFGVEGKDADELLELLMEADIDVRDILDEDGQAIIYAEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQNDIQLSGEDLEKFERLIDALEDLEDVQKVYHNVELED |
1BVO Chain:A ((37-123)) | ---------------------------------------------------------------------------QKTFPSIQVHGYR-GRAVVVVSCVTKEGPEHKPHPHNLVGKEGCKKGVCTVEINSTTMSYTFNNLGIQCVKKKDVEEALRLRQEIRVD---------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BVO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -17746 for 445 contacts (-39.9/contact) +
2D Compatibility (PS) -9146 + (NN) -6437 + (LL) 11080
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -27699.0 ( -62.24 by residue)
QMean score : 0.219
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