Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNILLVCNAGMSTSFLVEKMKAAGTEQGVEANIWAVSDAELHENWEKADVILLGPQVGYLKGNTEKVVGGKIPVEVINMLDYGRVNGAAVLERAIELIG
1IIB Chain:A ((4-93))
-KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNK-PVEVIDSLLYGKVDGLGVL--------
General information:
TITO was launched using:
RESULT:
Template:
1IIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62679 for 658 contacts (-95.3/contact) +
2D Compatibility (PS) -9760 + (NN) -2373 + (LL) 1276
1D Compatibility (HY) -9600 + (ID) 2000
Total energy: -85136.0 ( -129.39 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_1IIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IIB-query.scw
PDB file :
Tito_Scwrl_1IIB.pdb
: