Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYQSLSNIIINLQANKDLLLQQDNEVDRIKSILPLVVARNSIIETLGRNPVWGISLTDDVNNLKIDNQLVTEVIPFDWNNETLYLCYFSDLESSNSPSEMGISFQLVNIFSLS
2MKL Chain:C ((48-93))
------------------------------------VERKKGVET--QNPEWSGSKSTIVSKLK--------VMASEWDSGTEYVCLVEDSE---------------------
General information:
TITO was launched using:
RESULT:
Template:
2MKL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3776 for 177 contacts (-21.3/contact) +
2D Compatibility (PS) -4669 + (NN) 992 + (LL) 4796
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -5957.0 ( -33.66 by residue)
QMean score : -0.136
(partial model without unconserved sides chains):
PDB file :
Tito_2MKL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2MKL-query.scw
PDB file :
Tito_Scwrl_2MKL.pdb
: