Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYAEILAGGKGTRMGNVNMPKQYLPLKGKPIIVHTIEKFILNDRFEKIIIATPKDWINHTQDIIKKYIFDSRVI-VIEGGTDRNETIMNGIRYVEKEFGLNEDDIIVTHDAVRPFITHRIIEENIDMALEFGSVDTVIPAVDTIVESTNHDFITDIPVRGNIYQGQTPQSFNMKTIQKHYNN---LTDDEKQILTDACKICLLAGEKVKLVNGGISNIKITTPYDLKVANAIVQERINS
1VPA Chain:A ((13-229))
MNVAILLAAGKGERMSE-NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWF----EVVEKRVFHEKVLGIVEGGDTRSQSVRSALEFLEK----FSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVEN-DRIEYIPRKG-VYRILTPQAFSYEILKKAHENGGEWADDTEPVQKLGVKIALVEGDPL--------CFKVTFKEDLELARIIARE----
General information:
TITO was launched using:
RESULT:
Template:
1VPA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96777 for 1753 contacts (-55.2/contact) +
2D Compatibility (PS) -23402 + (NN) -10007 + (LL) 912
1D Compatibility (HY) -16400 + (ID) 3250
Total energy: -148924.0 ( -84.95 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_1VPA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VPA-query.scw
PDB file :
Tito_Scwrl_1VPA.pdb
: