Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNVKVYVTLKKSVLDPQGVAVKDAAKSMGYEEVEDVRIGKFMELKVAKSDRDIHEVLNEMCDKLLTNPVMEDYRYEIEEA
2DGB Chain:A ((4-78))
-YQATLLIELKKGILDPQGRAVEGVLKDLGH-PVEEVRVGKVLEIVFPAENLLEAEEKAKAMGALLANPVMEVYALE----
General information:
TITO was launched using:
RESULT:
Template:
2DGB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20795 for 416 contacts (-50.0/contact) +
2D Compatibility (PS) -7653 + (NN) -772 + (LL) 816
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -33104.0 ( -79.58 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_2DGB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DGB-query.scw
PDB file :
Tito_Scwrl_2DGB.pdb
: