Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLSNKQTVLCIEEMAKMFPAAHCELVHKNTFELLVAVVLSAQCTDVLVNRVTASLFEKYHSPEDYLAVPLEELMEDIRSIGLYRNKAKNIQGLSEKILTEFNGEVPKTHAELESLPGVGRKTANVVLSVGFGVPAIAVDTHVERISKRLGICRWKD------SVVEVEETLKRKLPKELWSDAHHYMIFFGRYHCKARNPECPTCPLLYLCREGKKQAKVRGFDG
1KEA Chain:A ((27-213))
-----------------FPWRH----TRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETL---VPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLC--------------
General information:
TITO was launched using:
RESULT:
Template:
1KEA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93234 for 1324 contacts (-70.4/contact) +
2D Compatibility (PS) -19030 + (NN) -10811 + (LL) 3188
1D Compatibility (HY) -13600 + (ID) 2650
Total energy: -136137.0 ( -102.82 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1KEA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KEA-query.scw
PDB file :
Tito_Scwrl_1KEA.pdb
: