Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQKVVIIGGGIVGASAAYLLSKENVQ--VTLIDSDEAGQATRAAAGIIC---PWLSKRRNKYWYELAKNSAAFYKELAETLEGDTGRDSGYKQVGVLALRQTEEKLAEL-FNLARERRLDAE-VMGEVAKLSEAETKQRFPLVKSG--FGSVYVSGAARVNGGLFCETLLYAAKENGVKIKAGRAHFS----SDGEVVIDGEK--EHYDKLILATGAWLKDLLQDAGFQTDVLAQKGQ-LLELNFSEFQT--DDWPVILPPSAKSIVPFDNGKIIVG--------------ATHEKAAGFNTEPTAEGKAEILTEVSQFMEGDLASK---VAHVSVGTRPYTPDFTPIIGQLPGFESVFLANGLGASGLTTGPYVGRILADLALGNASDFVLENYEPSKYISR |
| 4PAB Chain:A ((46-427)) | --ETVIIGGGCVGVSLAYHLAKAGMRDVVLLEKSELTAGSTWHAAGLTTYFHPGINLKKIHY------DSIKLY----ERLEEETGQVVGFHQPGSIRLATTPERVDEFKYQMTRTNWHATEQYIIEPEKIHEL-----FPLLNMDKILAGLYNPGDGHIDPYSLTMALATGARKYGVLLKYPAPVTSLKPRPDGTWDVETPQGSVRANRIVNAAGFWAREVGKMIGLDHPLIPVQHQYVVTSTIPEVKALKRELPVLRDLEGSYYLRQERDGLLFGPYESQEKMKLQASWVAHGVPPGFGKELFESDLDRITEHVEAAMEMVPVLKKADIINIVNGPITYSPDILPMVGPHQGVRNYWVAIGFGY-GIIHAGGVGKYLSDWILHGEPPFDLIELDPNRY--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PAB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126418 for 2936 contacts (-43.1/contact) +
2D Compatibility (PS) -37275 + (NN) -11787 + (LL) 2240
1D Compatibility (HY) -20800 + (ID) 4600
Total energy: -198640.0 ( -67.66 by residue)
QMean score : 0.477
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