Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VNLEKELKEYLGFDEFRPGQKEVIETALAKQNCFAMLPTGTGKTICYQLAGHLMDGLVLIVSPLLSLMQDQMERMRAHGEKRVAALNSFLKREEKGQILASI--HSYKFIFLSPEMLNNETVKNLLLKQKISLFVIDEAHCISQWGHDFRPDYLMLGRFIQEAKFP--VTMVLTATATKKVRADILTQLHLTDCAQIVYSVNRPNISLQVEKFSNQHVKKDRLYELVRKLQT--PGIIYFSSKKLAESTAHELSEIAELRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKADIRYVIHYHMPADLEAYLQEIGRAGRDGEDSVAILLYANGDEF-IQMQLADQDIPDANLMNLTTEQRKTLPETEQRFIDYYQRSGLSTKELTDKMDYRKKWKRANLQQFIGYLHTTDCRRNYILRYFEEAPLEVTPENCCDLDGAEIINFEKRAKIKQKEIPTWEAYLAYLLQ |
| 4Q48 Chain:A ((16-403)) | ------LQTIWGYPAFRGVQGEIVQQVAEGGNALVLMPTGGGKSLCYQLPSLLRPGTGIVVSPLIALMKDQVDTLRQNG-VRAAFLNSTLLPHEAREVEDALLRGDLDLLYVAPERLLMPRTLDLLERAPVALFAIDEAHCVSQWGHDFRPEYQQLSVLAE--RFPELPRVALTATADERTRADIKSVLRLEDAPQFVSSFDRPNIQYRV---GLKDSPKTQLLHFIREEHPGDAGIVYCLSRKSVEETAKWL-QAQGIDALAYHAGLSSTERNNVQERFLNEEGVIVCATVA-----DKPNVRFVAHLDLPKSMEGYYQETGRAGRDGLPSTAWMVYGLSDVVNVRRMLAQSDAPEEV----------------------------------------KRVEASKLDALLTYCEAATCRRQVLLHYFGEELSE--PCGNCDV------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q48.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -288142 for 3045 contacts (-94.6/contact) +
2D Compatibility (PS) -41348 + (NN) -20916 + (LL) 7528
1D Compatibility (HY) -27200 + (ID) 7050
Total energy: -377128.0 ( -123.85 by residue)
QMean score : 0.523
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