Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERLQKVIANAGITSRRKAEKLIQEGKVTVNGKVVTELGVKVSGTERIEVEGIQLTKEE-HRYFLFYKPRGTVSAVTDDKGRTTVADYFADIP--ERLYPVGRLDYDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRQLERGVVIDGRK--TAPAKVKVRSSDKTKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLSREEYSFLNLRG-LNAGERRELSHHEVKQLKTEARFGKNKK
1KSL Chain:A ((5-233))
--RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQGYVCS-TDDPDHPTVL-YFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ------VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV-----------
General information:
TITO was launched using:
RESULT:
Template:
1KSL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84562 for 1582 contacts (-53.5/contact) +
2D Compatibility (PS) -23812 + (NN) -6088 + (LL) 1416
1D Compatibility (HY) -15600 + (ID) 4150
Total energy: -132796.0 ( -83.94 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1KSL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KSL-query.scw
PDB file :
Tito_Scwrl_1KSL.pdb
: