Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKTNDVLLRNVTKVVAFIIFLFSLHLFFAGHYNPGGGFVAGLTTAGAITLTLLAYDTKTVASMLNINTIMLTGVGLVFALGTGMIGIFTGDPFLTHKFGHVDLPILGDTALHTATLFDLGVYLVVVGVTLTIIQTIGESD
2YIU Chain:A ((8-75))
-------------------------------HYEPKTGFERWLHRR--LPIVSLVYDTLMIPTPKNLNWWWIWGIVLAFCL---VLQIATGIVLVMHYTPHVDL-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2YIU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16628 for 282 contacts (-59.0/contact) +
2D Compatibility (PS) -6609 + (NN) 2916 + (LL) 5880
1D Compatibility (HY) -6400 + (ID) 1200
Total energy: -22041.0 ( -78.16 by residue)
QMean score : -0.178
(partial model without unconserved sides chains):
PDB file :
Tito_2YIU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YIU-query.scw
PDB file :
Tito_Scwrl_2YIU.pdb
: