Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPEQFQMALAEKGIELSDD---QMKQFHDYFEMLVEWNEKMNLTAITDEKEVYLKHFYDSISAAFYVDFTKFDTICDVGAGAGFPSLPIKICFPHLKVSIVDSLKKRMTFLDALAEKLGLTDVHFYHDRAETFGQNKAHREKYDLVTARAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFSFSLPVEESERNIYVITKTKETPNKYPRKPGTPNKLPIE
3G8B Chain:A ((12-248))
---ERGRALLLEGGKALGLDLKPHLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPL-
General information:
TITO was launched using:
RESULT:
Template:
3G8B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134758 for 1957 contacts (-68.9/contact) +
2D Compatibility (PS) -25044 + (NN) -11492 + (LL) 92
1D Compatibility (HY) -18000 + (ID) 4350
Total energy: -193552.0 ( -98.90 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_3G8B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G8B-query.scw
PDB file :
Tito_Scwrl_3G8B.pdb
: