Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNKKILFGTGLAGVGLLAAAGYTLTKKVTDYKRQQITQTLREFFSQMGDIQVF------YFNEFESDIKMTSGGLVLEDGRIFEFIYRQGVLDYVEVSK
2OFP Chain:A ((238-305))
----------------------HTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRKESEY------
General information:
TITO was launched using:
RESULT:
Template:
2OFP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4066 for 285 contacts (14.3/contact) +
2D Compatibility (PS) -6268 + (NN) 3456 + (LL) 1724
1D Compatibility (HY) -2000 + (ID) 950
Total energy: 28.0 ( 0.10 by residue)
QMean score : -0.082
(partial model without unconserved sides chains):
PDB file :
Tito_2OFP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OFP-query.scw
PDB file :
Tito_Scwrl_2OFP.pdb
: