Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISVDGELRTRKY-EKDGQTHYITEV---LASSFQLLESRSQRAMRENNISGDLSDLVLEEEELPF
1KAW Chain:A ((6-112))
--NKVILVGNLGQDPEVRYM----AVANITLATSES-------EQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQML-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KAW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32166 for 568 contacts (-56.6/contact) +
2D Compatibility (PS) -9754 + (NN) -2051 + (LL) 1940
1D Compatibility (HY) -7600 + (ID) 1750
Total energy: -51381.0 ( -90.46 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_1KAW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAW-query.scw
PDB file :
Tito_Scwrl_1KAW.pdb
: