Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNLDILYCKLAMCTTLLTERLRLQPVDLSNINDFLEFSSDSETVFYMQRYKANTTEEAQMVLANVCMKSPLGI-YAMI-ETESNKMIGIIELEIRDEFSAEFGYILNKNYSGKGYMTEACSKLMSVGFEYLDLERIYARFDINNKKSGNVMERLGMKKEGELRHLAKNPKGEWKTRAYYSILKEEYFNKVNTK
2Z0Z Chain:A ((13-176))
---------------------VRLEPLALAHLPAFLR-HYDPEVYRFLSRAPVAPTEEALRAHLEGLLGEPGRVNWAILFGKEVAGRISVIAPEP-EHAKLELGTMLFKPFWGSPANKEAKYLLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEEWPGVKARL
General information:
TITO was launched using:
RESULT:
Template:
2Z0Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64955 for 1159 contacts (-56.0/contact) +
2D Compatibility (PS) -17017 + (NN) -3366 + (LL) 2320
1D Compatibility (HY) -7600 + (ID) 2500
Total energy: -93118.0 ( -80.34 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_2Z0Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z0Z-query.scw
PDB file :
Tito_Scwrl_2Z0Z.pdb
: