Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKYIKADRFFYADHVKENGYLEIKDNHFGKWIENISGQEEILDYSGYQIAPGLVDTHIHGFAGADVMD----CDSEGILRMSAGLLSTGVTSFLPTTLTSDTKRLEEASKSVAAVAGKEQGAKIQGIYFEGPYFTEEYKGAQNPIYMRNPNLEEFAQWQKAAKGLITKIALAPEREGVEEFVSAITKQGVTVALGHSNGTYKEAKKAVKAGASVWVHAYNGMRGLTHREPGMVGAVYNLPNTYAELICDGHHVDPVACDILMTQKGHNHVALITDCMAAGGAPDGDYMLGELPVVVSNGTARLKDGGNLAGSILKLKDGLKNVVE-WGIATPEEAVRMASYVPAVSVGIDNVCGQIKEGYAADFIVLDKHLDLVATYLDGEKRWQS |
| 1YMY Chain:A ((47-378)) | ---------------------------------------------NGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAKHPNQAL-GLHLEGPWLNLV------PNFVRKPD-AALVDFLCENADVITKVTLAPEMVPAE-VISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKG-DKLCLVTDATAPAGANIEQFIFAGKTIYYRNGLC-VDENGTLSGSSLTMIEGVRNLVEHCGIAL-DEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTPDFKITKTIVNGNEVVTQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YMY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186195 for 2911 contacts (-64.0/contact) +
2D Compatibility (PS) -35065 + (NN) -15655 + (LL) 3664
1D Compatibility (HY) -20800 + (ID) 4850
Total energy: -258901.0 ( -88.94 by residue)
QMean score : 0.442
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