Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYKDDSLTLHTDLYQINMMQVYFNKGIHNKRAVFEAYFRKVPFENGYAVFAGLERIVRYLENLSFSDSDLSYLEELGYPEEFLDYLKNLKMELTVKSAKEGDLVFANE------PLVQIEGPLAQCQLVETAILNIINYQTLVATKAARIRSVIEDEPLLEFGTRRAQEMDAAIWGTRAAIIGGANATSNVRAGKIFNIPVSGTHAHALVQTYGDDYQAFKAYAETHKD---CVFLVDTYDTLRVGVPNAIRVAKEMGEKINFLGVRLDS-----GDLAYLSKKVRQQLDDAGFPNAKIYASNDLDENTILNLKMQKAKIDVWGVGTKLITAYDQPALGAVYKIVSIETDAGSMRDTIKLSNNAEKVSTPGKKQVWRITSRAKGKSEGDYITFADTDVTQLDEIEMFHPTYTYINKTVRDFDAVPLLVDIFDKGKLVYQLPSLQEIQEYGRKEFDQLWDEYKRVLNPQDYPVDLARDVWQNKMDLIDRIRKEALAKGEVR |
1YTD Chain:A ((58-298)) | -------------------------------------------------------------------------------DEVLKLLEGLDVDLY--AIPEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAILGFICQASGISTKASKVRLAAGDSPFFSFGIRRMHPAISPMI-DRSAYIGGADGVSGILGAKLIDQDPVGTMPHALSIMLGDE-EAWKLTLENTKNGQKSVLLIDTYMDEKFA---AIKIA-EMFDKVDY--IRLDTPSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTV--KKLREAGAEAFGVGTSISSAKPFDFAMDIVEVNGKPETKRGKMSGRKNVLRCTSCHRIEVVPANVQEKTCICGGSMQNLLVKYLSHGKRTSEYPRPKEIRSRSMKELEYFK----------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -114876 for 1777 contacts (-64.6/contact) +
2D Compatibility (PS) -24758 + (NN) -8670 + (LL) 10604
1D Compatibility (HY) -17600 + (ID) 4050
Total energy: -159350.0 ( -89.67 by residue)
QMean score : 0.483
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