Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQKFKERFDTLSDAILAIAMTILVLEIKTPATMGDIGDFTRNIGLFIVSFVVVFNFWYERAQNSLDAQKTNDEIIALDIIEHLGICLIPLFTKFMISFENHNFAVMAYGLLTLLVGLTSDIIRIRLASYDLVTIPSELKERVIKVMTTFAIRSVVVRFIIIILAYFLPEVGIFAYLVIPLFMFWRRSRAGKYYAKKGIEAPSYIKLFIQIGERAPEDFTNSSSGIGGVKRLYKK |
1KMO Chain:A ((576-619)) | ------------------------------GTRYDDGALTAEMGLFLINF-----------NNQYDSNQTNDTVTARGKTRHTGL----------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KMO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -75 for 183 contacts (-0.4/contact) +
2D Compatibility (PS) -4676 + (NN) -1160 + (LL) 18004
1D Compatibility (HY) -1200 + (ID) 800
Total energy: 10093.0 ( 55.15 by residue)
QMean score : 0.007
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