Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIGLFCAAGFSTGMLVNNMKIAADKEGIEAHIEAYSQGKIADYAKDLDVALLGPQVSYTLDKSKSICDEYGVPIAVIPMADYGMLDGVKVLKLALSLLETRKEA
2WWV Chain:D ((6-93))
---IYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNK--PVEVIDSLLYGKVDGLGVLKAAVAAIKKAAA-
General information:
TITO was launched using:
RESULT:
Template:
2WWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79273 for 642 contacts (-123.5/contact) +
2D Compatibility (PS) -9260 + (NN) -896 + (LL) 560
1D Compatibility (HY) -7600 + (ID) 1650
Total energy: -98119.0 ( -152.83 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_2WWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WWV-query.scw
PDB file :
Tito_Scwrl_2WWV.pdb
: