Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEYDQINSYLVDIFNRIMIIEEMSLKT----SQFSDVSLKEMHTIEIIGKHSE--VTPSDVARELMLTLGTVTTSLNKLEKKGYIERKRSSIDRRVVHLSLTKRG-RLLDRLHSKF---HKSMVSHIIEDLGEEDIKMLTSALGNLHKFLEDLV
4LLL Chain:A ((12-140))
-----------------MISHEMKQKADQKLEQF-DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ-------
General information:
TITO was launched using:
RESULT:
Template:
4LLL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38303 for 731 contacts (-52.4/contact) +
2D Compatibility (PS) -12310 + (NN) -3910 + (LL) 2228
1D Compatibility (HY) -5600 + (ID) 2000
Total energy: -59895.0 ( -81.94 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_4LLL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LLL-query.scw
PDB file :
Tito_Scwrl_4LLL.pdb
: