Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYVIFSFEEGDYLC-DNKDKLLIFESRGLAYQYMQKHYLKPIPLQKTKRIMYPMSYYQAPFKVQQVC
2PAG Chain:A ((86-111))
-ELIPICQDGEDYYCVEEDGTVLLWSALVTEESWESVWHWARDVWLES--------------------
General information:
TITO was launched using:
RESULT:
Template:
2PAG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13978 for 103 contacts (-135.7/contact) +
2D Compatibility (PS) -2646 + (NN) -412 + (LL) 1812
1D Compatibility (HY) -3200 + (ID) 200
Total energy: -18624.0 ( -180.82 by residue)
QMean score : 0.185
(partial model without unconserved sides chains):
PDB file :
Tito_2PAG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PAG-query.scw
PDB file :
Tito_Scwrl_2PAG.pdb
: