Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVTMTISGEMILIEYYGENFPLHPQEWKDYHSFWQEDYIRFHFQTDIGTLTIYDGNYDLTLLW------GEPVHRIEKLYHQLLTDPIPVMVYGDERFQEAYRTENGQTKNLYLEHVCNVCKEAYEVLFKQINQKERNT
4Q2C Chain:A ((377-426))
---------------------------------------DYLRHRYPEDVVVVNLVHGHSDLSALLQELRQKGEEIFQLQGVYDEALGDEQLGAVVAGQWFTRGKRALLPPYGVGTVDQALLAVLQVKHVFVRLFALSTKTV
General information:
TITO was launched using:
RESULT:
Template:
4Q2C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7030 for 156 contacts (-45.1/contact) +
2D Compatibility (PS) -4643 + (NN) -1882 + (LL) 3084
1D Compatibility (HY) -4400 + (ID) 650
Total energy: -15521.0 ( -99.49 by residue)
QMean score : -0.256
(partial model without unconserved sides chains):
PDB file :
Tito_4Q2C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q2C-query.scw
PDB file :
Tito_Scwrl_4Q2C.pdb
: