Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAFIPFKKSNKCVVTDELFLEVTWEDGKPPEDDSELLGIIEGLEQQYLDSFQHSIEESLPYMTFQQAELLFQSLKDAYGHFQLKKVAICHLEGKQAVSEGEVFASPFIIDSRYQNLLLPLIQSIMIGPDFQSYTYQEKREYFVNQIYPAYKVSLGIQESALPLFPEEGEQIPLDNTFVANRRVASIPTTSSEPRKPNSSFSLKKVYLLMGFLATLAAGAMVSSVSLHAELSKQQEQVNYLYQEWKDIQNLSDKEHQIDVFSRYFLPNYYS---GKKENLSDFLSDGDAKYTVPKEGSLQSVILEKVTYDAKTKHYQLTYVLTIKAKEQLTSVRLEFEVKEQPSRKYGYVVTSEPKETPYLMKN |
1COY Chain:A ((161-266)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DQAWFESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKE----------AAGQVTKSGLGGEVIYGN---NAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1COY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 38640 for 506 contacts (76.4/contact) +
2D Compatibility (PS) -10602 + (NN) -1605 + (LL) 17308
1D Compatibility (HY) -800 + (ID) 1700
Total energy: 41241.0 ( 81.50 by residue)
QMean score : 0.039
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