Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKLLGQAGFGSRNQVKKLIRSRQVSVDGQIVTKDNVIVDSGLQSIFVGKERVCLKESSYYLL-----YKPSGVVSAVRDSEHK-TVIDLISEKDRVEGLYPIGRLDRDTEGLLIITNNGPLGYRMLHPKHHVAKTYYVEVNGFLERDAITFFEEGVVFDDGTKCKPAEL-TIDTANND--KSTARITITEGKFHQVKKMFLAYGVKVIYLRRISFGDLRLDMNLKPGQYRRLRDSEAAILKRYLD
4LAB Chain:A ((69-249))
--------------------------------------------------------------QICRVLAYYKPEGELCTRNDPEGRPTVFDRLP-KLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELVE
General information:
TITO was launched using:
RESULT:
Template:
4LAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69705 for 1158 contacts (-60.2/contact) +
2D Compatibility (PS) -18300 + (NN) -4089 + (LL) 4564
1D Compatibility (HY) -13600 + (ID) 2800
Total energy: -103930.0 ( -89.75 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_4LAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LAB-query.scw
PDB file :
Tito_Scwrl_4LAB.pdb
: