Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYLEQLKEVNPLTICITNNVVKNFTANGLLALGASPAMSECIEDLEDLLKVANALLINIGTLTKESWQLYQEAIKIANKNQVPVVLDPVAAGASRFRLEVSLDLLKNYSISLLRGNGSEIAALVGEKQASKGADGGKVADLES--IAVKANQVFDVPVVVTGETDAIAVRGEVRLLQNGSPLMPLVTGTGCLLGAVLAAFIGSSDRSDDLACLTEAMTVYNVSGEIAEKVAKGKGVGSFQVAFLDALSQMKSEMIMDK
3HPD Chain:A ((8-254))
--LKRVRERRPLVHNITNFVVMNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEILSR-GVDVLKGNFGEISALLGEEG----------GEEEAKKLTMNAAREFNTTVAVTGAVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAV---TEPLKATTSALVTFGIAAEKAYEEAKYP--GSFHVKLYDWLYRINENVIRTY
General information:
TITO was launched using:
RESULT:
Template:
3HPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186905 for 2163 contacts (-86.4/contact) +
2D Compatibility (PS) -25277 + (NN) -10106 + (LL) 396
1D Compatibility (HY) -15600 + (ID) 4750
Total energy: -242242.0 ( -111.99 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_3HPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HPD-query.scw
PDB file :
Tito_Scwrl_3HPD.pdb
: