Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLFQEKIAYNCAKKEALYKESLGRYALRSMLAGAYLTMSTAAGIVAADTIGKI-----SPALSGFVFAFIFSFGLIYVLIFNGELATSNMLYLTAGAYNKNISWKKAITILIYCTFFNLVGACILAWLFNQSYSFQHLTNDSFLGHVVAKKLGKPSSGAFLEGIIANMFVNLAILAYMLLKEESAKMTVILSAIFMFVFLSNEHLIANFASFMLAAFSHIEHIKGFTLLNVIRQWTLVFFGNWIGGGVFIGLAYAWLNKTKTSHHE
3TE0 Chain:A ((10-259))
-----DKLTNAAINKINLLNTSKVKYLVSSAFAGLYVGI----GILLIFTIGGLLTDAGSP-MTKIVMGLSFAIALSLVIMTGTELFTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVAEFFANTAASEASMPFTALFFRGILCNILVCVSVLCSFRTNSDTAKIIMIFLCLFAFITSGFEHSVANMTIYSVSLFS--PTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEK-----
General information:
TITO was launched using:
RESULT:
Template:
3TE0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -238464 for 2208 contacts (-108.0/contact) +
2D Compatibility (PS) -26099 + (NN) -14000 + (LL) 1528
1D Compatibility (HY) -22400 + (ID) 3600
Total energy: -303035.0 ( -137.24 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_3TE0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TE0-query.scw
PDB file :
Tito_Scwrl_3TE0.pdb
: