Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLYVQLMVILTFSFAGEVLSTIFNLPVPGSIIGLILLFLALKYKIIRLRHIDAVGNFLLANMTILFLPPAVGLMEHFQDIKPYLFGIAIIILGALFLNILTIGLVSQWIKKRYEGDYPEIGGKNGNFNE
2KNC Chain:B ((695-716))
--------------------------------------------------------------------------------------VVLLSVMGAILLIGLAALLIWK----------------------
General information:
TITO was launched using:
RESULT:
Template:
2KNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6196 for 80 contacts (-77.5/contact) +
2D Compatibility (PS) -2367 + (NN) -1197 + (LL) 8520
1D Compatibility (HY) -2800 + (ID) 250
Total energy: -4290.0 ( -53.62 by residue)
QMean score : 0.195
(partial model without unconserved sides chains):
PDB file :
Tito_2KNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KNC-query.scw
PDB file :
Tito_Scwrl_2KNC.pdb
: