Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKRPIHLSHDFLAEVIDKEAITLDATMGNGNDTVFLAK---SSKKVYAFDIQEEAIAKTKAKLTEQGISNAELILDGHENLEQYV----HTPLRAAIFNLGYLPSADKTVITKPHTTIKAIKNVLDILEVGGRLSLMVYYGHDGGKSEKDAVIAFVEQLPQNNFATMLYQPLNQVNTPPFLIMVEKLQSYENEV
4POO Chain:A ((12-194))
----ILPYSKELLKMAAGEGDIVIDATMGNGHDTQFLAELVGENGHVYAFDIQESAVANTKERLGEAYQARTTLFHKSHDKIAKSLPPETHGKVAAAVFNLGYLPGGD--ITTNGSSTIKAIEQLLSIMKDEGLIVLVVYH---EGKAEKNDVLDFCRNLDQQAARVLTYGFINQQNDPPFIVAIEKKA------
General information:
TITO was launched using:
RESULT:
Template:
4POO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96268 for 1373 contacts (-70.1/contact) +
2D Compatibility (PS) -18260 + (NN) -2260 + (LL) 872
1D Compatibility (HY) -14400 + (ID) 3550
Total energy: -133866.0 ( -97.50 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_4POO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4POO-query.scw
PDB file :
Tito_Scwrl_4POO.pdb
: