Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKFLVECGLGSRTQVKLILKKKQISVNGNSETSPKVQVDEYRDEIKYNGTLVSYEK-----FVYYMLHKPKGVISATDDPSHK-TVLDLLDKTARDKAVFPVGRLDIDTTGLLLITNNGELAHKMLSPKKHVDKCYEAKISGIMTEDDILAFDKGIILKDFTCLPALLEIVEVNQVKK-QSLVKITIKEGKFHQVKRMVAACGKEVLELKRLRMGNLQLDKQLESGQWRRLTIKEIEKLEKYMQ
4LAB Chain:A ((69-249))
-----------------------------------------------------------QICRVLAYY---KPEGELCTRNDPEGRPTVFDRLPKL-RGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG---PAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELVE
General information:
TITO was launched using:
RESULT:
Template:
4LAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67398 for 1209 contacts (-55.7/contact) +
2D Compatibility (PS) -19014 + (NN) -3780 + (LL) 4760
1D Compatibility (HY) -14800 + (ID) 2800
Total energy: -103032.0 ( -85.22 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_4LAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LAB-query.scw
PDB file :
Tito_Scwrl_4LAB.pdb
: