Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKSKNLRAALEKIDSTKAYSVEEAVALAKETNFAKFDATVEVSYNLNIDVKKADQQIRGAMVLPAGTGKTSRVLVFARGAKAEEAKAAGADFVGEDDLVAKIQGGWLDFDVVIATPDMMALVG-RLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQALIGKVSFDDAKLVDNFKAFNDVIVKAKPATAKGTYITNLSITTTQGVGIKVDPNSL
3U56 Chain:A ((2-229))
-PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPHS-
General information:
TITO was launched using:
RESULT:
Template:
3U56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105842 for 1845 contacts (-57.4/contact) +
2D Compatibility (PS) -25397 + (NN) -20498 + (LL) 384
1D Compatibility (HY) -16000 + (ID) 5450
Total energy: -172803.0 ( -93.66 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_3U56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U56-query.scw
PDB file :
Tito_Scwrl_3U56.pdb
: