Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTQFLGEFLGTFILVLLGDGVVAGNVLSKTKEEGTGWT-AIVFGWGIACTVAVYVSGLFSPAHLNPAVTLAMASIGAISWGQVIPFIIAQMLGAMVAATILWLHYYPHWKETKDSGLIL----------ASFST--GPAIRHTPSNLLGEIIGTAILVITIMAI---GPSKVAAGLGPIIVGIVIFAVGFSLGPTTGYAINPARDLGPRLMHAIL---PIENKGDSDWSYAWIPVVGPIIGGVLGAILYNIALTLI |
| 1LDF Chain:A ((10-252)) | --QCIAEFLGTGLLIFFGVGCVAA--LKVAGASFGQWEISVIFGLGVA--MAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAV-EMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRH |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LDF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174329 for 1921 contacts (-90.7/contact) +
2D Compatibility (PS) -22610 + (NN) -462 + (LL) 308
1D Compatibility (HY) -27600 + (ID) 4200
Total energy: -228893.0 ( -119.15 by residue)
QMean score : 0.187
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