Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATYETFAAVYDAVMDDTLYDKWTDFSLRHFPKGKKKLLELACGTGIQSVRFSQAGYAVTGLDLSGDMLKLAKKRATSAHQSIQFIEGNMLDLSNVGKYDLITCYSDSICYMQDEVEVGDVFIEVYKA-LEENGVFIFDVHSTYQTDKVFPGY--SYHENADDFAMVWDTYEDDAPHSIVHELTFFVQEEDGRFTRHDEVHEERTYDILTYDILLEQAGFKDVKVYADFEDKKPTATSARWFFVAHK
3PFH Chain:A ((46-246))
----------------------------RHSPK-AASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDA----VLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAEL-DAALERFAAHVLPDGVVV--VEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLS-----VEF---MPGGPSGRGLFTGLP
General information:
TITO was launched using:
RESULT:
Template:
3PFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100774 for 1525 contacts (-66.1/contact) +
2D Compatibility (PS) -21351 + (NN) -5906 + (LL) 3000
1D Compatibility (HY) -6800 + (ID) 2800
Total energy: -134631.0 ( -88.28 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_3PFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PFH-query.scw
PDB file :
Tito_Scwrl_3PFH.pdb
: