Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIEITWTVKYITEFIATAFLIILGNGAVANVDLKGTKGNNSGWIIIAIGYGLGVMMPALMFGNVSGNHINPAFTLGLAFSGLFPWAHVGQYILAQILGAMFGQLVVVMVYQPYFVKTENPNHVL-GSFSTISALDDGQKSSRKAAYIN---GFLNEFVGSFVLFFGALALTKNYFGVELVGKLVQAGYDQTTAATRISPYVTGSLAVAHLGIGFLVMTLVASLGGPTGPALNPARDLGPRIVHRLLP-KQILGQAKEDSKWWYAWVPVLAPIVASILAVALFKLLYL |
1LDI Chain:A ((10-254)) | --------QCIAEFLGTGLLIFFGVGCVAALKVAGASFGQ--WEISVI-WGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDL--AGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVP-----------------------RGPL--APLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIP--YFLVPLFGPIVGAIVGAFAYRKLIG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LDI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134659 for 2138 contacts (-63.0/contact) +
2D Compatibility (PS) -24914 + (NN) -6336 + (LL) 3268
1D Compatibility (HY) -24800 + (ID) 4250
Total energy: -191691.0 ( -89.66 by residue)
QMean score : 0.302
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