Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKERELRRTMAVFPIGTVMKLTDLTARQIRYYEDQGLITP-ERTEGNRRMFSLNDMDRLLEIKDFISDGLHISDIKNEYMQRQHKSKEKQKSLSDAEVRRLLQDELRNQGRFSSPSQHIGNMHL
2VZ4 Chain:A ((2-51))
------------YSVGQVAGFAGVTVRTLHHYDDIGLLVPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDDRAHLRRQHELLSARIGKLQKMAAAVEQAME-------------
General information:
TITO was launched using:
RESULT:
Template:
2VZ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28835 for 301 contacts (-95.8/contact) +
2D Compatibility (PS) -5202 + (NN) -1622 + (LL) 2124
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -37635.0 ( -125.03 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_2VZ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VZ4-query.scw
PDB file :
Tito_Scwrl_2VZ4.pdb
: