Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIALFAGGDLTYFEYDFDYFVGIDRGSLFLLKNGLSLDMAVGDFDSITEDELLYIKHYCSNIVSASAEKNDTDTELALKTIFKEFPEAQVTVFGAFGGRIDHMMSNIFLPSDTDLEPFMSQIRLKDEQNIVTYLPSGKNQVSRIEGMSYVSFMPESEST-LQISGAKYEL-NKSNYFKKKMYSSNEFMTSPIEVELKDGYLIIIYSKDRG
3L8M Chain:A ((19-211))
---------------EHKHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQIE-INPYN---DDTDLALGIDQAVKR-GYRNIDVYGATGGRLDHFMGALQILEKPEYAKMNINIKLIDDTNEIQFIQKGQFNV-----FPYISFIPVI-PTVISLKGFKYNLQNE-------LTISNEL---CGNIEIIEGSVLMIRSKDE-
General information:
TITO was launched using:
RESULT:
Template:
3L8M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61391 for 1170 contacts (-52.5/contact) +
2D Compatibility (PS) -18760 + (NN) -10124 + (LL) 2472
1D Compatibility (HY) -14000 + (ID) 2950
Total energy: -104753.0 ( -89.53 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_3L8M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L8M-query.scw
PDB file :
Tito_Scwrl_3L8M.pdb
: