Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLVGKEIIEFSAQAYHDGKFITVTNEDVKGKWAVFCFYPADFSFVCPTELGDLQEQYETLKSLDVEVYSVSTDTHFVHKAWHDDSDVVGTITYPMIGDPSHLISQGFDVLGQD-GLAQRGTFIIDPDGVIQMMEINADGIGRDASTLIDKVRAAQYIRQHPGEVCPAKWKEGAETLTPSLDLVGKI
1YEP Chain:A ((1-168))
-SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAK------------------
General information:
TITO was launched using:
RESULT:
Template:
1YEP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89543 for 1261 contacts (-71.0/contact) +
2D Compatibility (PS) -18419 + (NN) -11085 + (LL) 1284
1D Compatibility (HY) -18400 + (ID) 4850
Total energy: -141013.0 ( -111.83 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_1YEP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YEP-query.scw
PDB file :
Tito_Scwrl_1YEP.pdb
: