Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQIKLTPEVLRASAQKYTIGSQSITDVLTALTQEQAVIDENWDGTAFDSFEAQFNELSPKITQFAQLLEDINQQLLKVADVVEQIDSDIASQINQ
2VS0 Chain:A ((4-85))
---IKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQE-----------
General information:
TITO was launched using:
RESULT:
Template:
2VS0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18532 for 471 contacts (-39.3/contact) +
2D Compatibility (PS) -8643 + (NN) -890 + (LL) 1008
1D Compatibility (HY) -6000 + (ID) 2100
Total energy: -35157.0 ( -74.64 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_2VS0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VS0-query.scw
PDB file :
Tito_Scwrl_2VS0.pdb
: