Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQDELYMKEAIKEAKKAEEKGEVPIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPCPMCAGAVVLSRVEKVVFGAFDPKGGCSGTLMNLLQEERFNHQAEVVSGVLEEECGGMLSAFFRELRKKKKAARKNLSE
3OCQ Chain:A ((20-162))
----EYWMRHALTLAKRAWDEREVPVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDTTLYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEIIEGVLRDECATLLSDFFRM--------------
General information:
TITO was launched using:
RESULT:
Template:
3OCQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96298 for 1241 contacts (-77.6/contact) +
2D Compatibility (PS) -15557 + (NN) -6169 + (LL) 1460
1D Compatibility (HY) -14400 + (ID) 3250
Total energy: -134214.0 ( -108.15 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_3OCQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OCQ-query.scw
PDB file :
Tito_Scwrl_3OCQ.pdb
: