Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKVRKSFVLLLTGLLAVLILSACGQKTQQDIVAGLDEKAKEYTSYKAKAKMTIETGSEPQVYNVEIWHKKPSLYRVYLENPKKDQNQVILRNENGVFVLTPSLNKSFRFQSDWPNNSSQVYLFESLVKDVQNDSDAVFTAKEKKYVFETKTNYQHNKMLPTQEITFNKKDMSPSSVKVMDTDRKVMVKVEFSSFEFNKQFDKESFDEKKNMTLSQMDVATSAKPSDTFAV---------------KTPLEL---PLGVKLLEEK-----DISTEDGKRIIMTYGGEKSFTLIQEKAQIAKASSSVTLNGEPVNLGYTIGALSDASLSWTYDGVDYLLSSKDLSKEEMVTVAKSMQGQSSK
1E4F Chain:T ((138-283))--------------------------------------------------------------------------------------------------------------------------------------------------------------LLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLDTSFEESERLIITHGNAVYNDLKEEEIQ---------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1E4F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain T - contact count / total energy / energy per contact / energy per residue : 171 -9576 -56.00 -81.85
target 2D structure prediction score : 0.46
Monomeric hydrophicity matching model chain T : 0.57

3D Compatibility (PKB) : -56.00
2D Compatibility (Sec. Struct. Predict.) : 0.46
1D Compatibility (Hydrophobicity) : 0.57
QMean score : 0.102

(partial model without unconserved sides chains):
PDB file : Tito_1E4F.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1E4F-query.scw
PDB file : Tito_Scwrl_1E4F.pdb: