Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTILAIDTSNYTLGIALLREDTVIAEYITYLKKNHSVRAMPAVHSLLNDCDMAPQDLSKIVVAKGPGSYTGVRIGVTLAKTLAWSLDIPISAVSSLETLAANGRHFDGL--ISPIFDARRGQVYTGLYQY-KNGLLEQVVPDQNVMLADWLEMLKEKDRPVLFLGHDTSLHKQMIEDVLGTKGFIGTAAQHNPRPSELAFLGKEKEAADVHGLVPDYLRLAEAEAKWIESQK
4YDU Chain:C ((1-134))MRILAIDTATEACSVALWNDGTVNAHF-ELCPREHTQRILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGAWRKNGATRVLAAIDARMGEVYWAEYQRDENGI-------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4YDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 582 -91771 -157.68 -700.54
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain C : 0.70

3D Compatibility (PKB) : -157.68
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.400

(partial model without unconserved sides chains):
PDB file : Tito_4YDU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YDU-query.scw
PDB file : Tito_Scwrl_4YDU.pdb: