Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAALPAPEKLLRSDFPVLWPVGTRWADNDMFGHLNNAVYYQLFDTAINAWINTSTGVDPLAMPVLGIVAESGCRYFSELRFPESLMVGLAVTRLGRSSVTYRLGVFKEPDDAGVITALGHWVHVYVDRTSRRPVPIPEAIRSLLSTACVSG
2AV9 Chain:A ((5-140))
----PRP---LREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQGGEVIGLVVSSSCDYFAPVAFPQRIEMGLRVARLGNSSVQYELALFLEGQREA--CAAGRFVHVFVERRSSRPVAIPQELRDALA------
General information:
TITO was launched using:
RESULT:
Template:
2AV9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105441 for 1012 contacts (-104.2/contact) +
2D Compatibility (PS) -15096 + (NN) -11556 + (LL) 1656
1D Compatibility (HY) -14400 + (ID) 3050
Total energy: -147887.0 ( -146.13 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_2AV9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AV9-query.scw
PDB file :
Tito_Scwrl_2AV9.pdb
: