Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDEPTPPEATTPNSESDPRYDSAGVPTFESVREKIETRYGTALGATELDAESPQGRRLEDQYAQRQRAAAERLAQIRESMHTDE
1YBZ Chain:A ((15-28))
------------------------GSTTLKLLRKEIDK-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YBZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -334 for 49 contacts (-6.8/contact) +
2D Compatibility (PS) -1379 + (NN) 676 + (LL) 3560
1D Compatibility (HY) -800 + (ID) 200
Total energy: 1523.0 ( 31.08 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_1YBZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YBZ-query.scw
PDB file :
Tito_Scwrl_1YBZ.pdb
: