Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAGAITDQLRRYLHGRRRAAAHMGSDYDGLIADLEDFVL----GGGKRLRPLFAYWGWHAVASR-EPDPDVLLLFSALELLHAWALVHDDLIDRSATRRGRPTAQLRYAALHRDRDWRGSPDQFGMSAAILLGDLAQVWADDIVSKVCQSALAPDAQRRVHRVWADIRNEVLGGQYLDIVAEASAAE------------SIESAMNVATLKTACYTVSRPLQLGTAAAADRSDVAAIFEHFGADLGVAFQLRDDVLGVFGDPAVTGKPSGDDLKSGKRTVLVAEAVELADRSDPLAAKLLRTSIGTRLTDAQVRELRTVIEAVGARAAAESRIAALTQRALATLASAPINATAKAGLSELAMMAANRSA |
4GP1 Chain:A ((28-325)) | ----------------------------GLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRP---ALPAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVR----------------KAFGDNAAILVG----IWYREAIEEAVLDTPKPTL---FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGA-LIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYG-------EIGKDIKEHKRGNAVV-AVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNNGTLK--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GP1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139744 for 2259 contacts (-61.9/contact) +
2D Compatibility (PS) -29756 + (NN) -19560 + (LL) 4740
1D Compatibility (HY) -13200 + (ID) 4650
Total energy: -202170.0 ( -89.50 by residue)
QMean score : 0.479
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