Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDGKRAVTSAVLVVLGACLALWLSGCSSPKPDAEEQGVPVSPTASDPALLAEIRQSLDATKGLTSVHVAVRTTGKVDSLLGITSADVDVRANPLAAKGVCTYN------DEQGVPFRVQGDNISVKLF--DDWSNLGSISEL-STSRVLDPAAGVTQLLSGVTNLQAQGTEVIDGISTTKITGTIPASSVKMLDP--GAKSARPATVWIAQDGSHHLVRASIDLGSG-SIQLTQSKWNEPVNVD
3MH9 Chain:C ((45-230))
-----------------------------------------------------VEEATAQTKALKSAHMVLTVNGKIPGL-SLKTLSGDLTTNPTAATGNWKLTLGGSDIDADFVVF----DGILYATLTPNQWSDFGPAADIYDPAQVLNPDTGLANVLANFADAKAEGRDTINGQNTIRISGKVSAQAVNQIAPPFNATQPVPATVWIQETGDHQLAQAQLDRGSGNSVQMTLSKWGEKVQV-
General information:
TITO was launched using:
RESULT:
Template:
3MH9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71690 for 1333 contacts (-53.8/contact) +
2D Compatibility (PS) -18929 + (NN) -5490 + (LL) 3252
1D Compatibility (HY) -10400 + (ID) 3050
Total energy: -106307.0 ( -79.75 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_3MH9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MH9-query.scw
PDB file :
Tito_Scwrl_3MH9.pdb
: